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Part 3c

Claude for Research

Skills, Projects and CoWork. Claude's strengths are long-context drafting, careful citation discipline, and structured collaboration with co-authors and RAs.

SECTION OBJECTIVES
  • Author one Claude Skill for a repeatable scholarly workflow.
  • Set up a Project with a curated knowledge base for an active piece of work.
  • Make use of at least one connectors to improve output.

Claude

by Anthropic

Anthropic's AI assistant: Skills for specialised tasks, Projects for knowledge-based workspaces, and CoWork for collaborative drafting with co-authors and RAs.

Open Claude
01

Claude Skills

Packaged capabilities, instructions plus optional files and scripts, that Claude can load on demand to perform a specialised task consistently. Think 'a folder of expertise Claude opens when relevant.'

Claude Desktop Customize panel showing the Skills list and the writing-style-academic skill
In Claude, open Settings → Customize → Skills to browse, install, and manage Skills. Each Skill has a description, a trigger, and the SKILL.md instructions Claude loads on demand.

What a Claude Skill actually is

A Skill is a small folder Claude opens on demand: a SKILL.md with instructions and a trigger line, plus optional reference files (style guides, codebooks, exemplars) and scripts. The trigger line is what makes the Skill load reliably. Be specific about the surface (pasted text, uploaded file, keyword) and the job to be done.

Below are three blueprints lecturers can copy into SKILL.md and adapt. Each one follows the same shape: purpose → trigger → instructions → files to attach.

Build your own. Three blueprints

Download & install. Community Skills

Skills travel as folders. Clone or download any of the repositories below, then drop the folder into Claude (Settings → Capabilities → Skills → Upload) and enable it. The trigger line inside SKILL.md tells Claude when to load it. Open the file before installing so you know what to expect.

Installing a downloaded Skill. 1) Download the SKILL.md file. 2) Open Claude → Settings → Capabilities → Skills. 3) Upload the SKILL.md file. 4) Enable it and test with a prompt that matches the trigger line. 5) Audit periodically. Remove Skills you no longer use so they don't compete for the trigger.
02

Claude Projects

A workspace with persistent instructions and a large knowledge base of files. Claude reads across the project's knowledge on every message, with citations back to the source files.

Claude's Projects page listing user projects
In Claude, open Projects and click New project to create a workspace scoped to a single paper, grant, or course.

Prompts to copy & adapt

Project system prompt for a paper-in-progress

When to use: Set as the Project's custom instructions.

This Project is the working folder for [PAPER]. The knowledge base contains the current draft, my reading notes, 12 key sources, and the target journal's author guidelines. My argument is: [ONE SENTENCE]. My audience is reviewers at [JOURNAL]. For every task: (1) cite the specific file you draw on, (2) never invent references, (3) match my voice. Hedged, specific, no marketing language, (4) when I ask for a rewrite, preserve every citation and flag any claim not supported by the cited source.

Ongoing-study Project. System prompt

Knowledge base: the pre-registered protocol, the codebook, prior analysis notes, and any results memos to date. For every request, ground in these files. Never propose analyses outside the pre-registered plan without flagging them as exploratory. When summarising results, distinguish confirmatory from exploratory findings and surface anything inconsistent with earlier memos in this Project.

Reviewer-feedback-loop prompt

Reviewer comments are uploaded to this Project as 'reviewer-1.pdf' and 'reviewer-2.pdf'. For each substantive comment: (1) classify as agree / partially agree / disagree, (2) draft a 3–4 sentence response in my voice, (3) list the exact change to make in the manuscript with the section and approximate line.
03

Claude Prompts

Five ready-to-use prompts that target distinct stages of research writing. From calibrating claims against your evidence to stress-testing your literature review and drafting responses to reviewers.

Prompts to copy & adapt

Tightening an argument without overclaiming

When to use: When your discussion section feels too strong or your claims outrun your data.

Review this discussion section and flag every sentence where the claim exceeds what my data can support. For each one, suggest a hedged alternative that stays accurate to my findings. My study used [design, sample size, method], so calibrate the language to that evidence base.
Context tip. This forces Claude to act as a calibration check rather than a polisher. The key is feeding it your actual methodology so it knows what your evidence can and cannot carry.

Stress-testing your literature review

When to use: When you suspect your literature review is too thin, too descriptive, or leans on a few sources too heavily.

Here is my literature review on [topic]. Act as a sceptical reviewer and identify: gaps I have glossed over, sources I am leaning on too heavily, claims that need a citation, and any places where I have summarised studies without synthesising them. Do not rewrite anything yet, just diagnose.
Context tip. Separating diagnosis from rewriting matters. If you ask for both at once, Claude tends to fix things superficially without you understanding what was weak.

Drafting from a skeleton, not from nothing

When to use: When you have bullet-point arguments and want prose that stays faithful to your ideas.

I will give you my bullet-point argument for the introduction: [points]. Expand each point into prose in my voice, but do not add any claims, examples or citations I have not provided. If a logical step is missing between my points, flag it instead of inventing a bridge.
Context tip. This keeps you as the author of the ideas. The instruction to flag gaps rather than fill them is what prevents fabricated connective tissue.

Responding to reviewers

When to use: When reviewer comments arrive and you need a measured, structured response.

Here is Reviewer 2's comment: [paste]. Here is the relevant section of my manuscript: [paste]. Help me draft a response that (a) addresses the substance of the concern, (b) specifies exactly what I changed and where, and (c) pushes back politely on the part I disagree with, with justification. Keep the tone professional but not grovelling.
Context tip. The three-part structure stops the response from becoming either defensive or excessively deferential, which are the two ways these letters usually go wrong.

Checking methods for reproducibility

When to use: Before submission, when you want to surface the omissions you are blind to.

Read my methods section as if you were a doctoral student trying to replicate this study with no access to me. List every decision point where you would have to guess: sampling, instruments, procedure, analysis. Phrase each as a question I need to answer in the text.
Context tip. Framing it as replication questions surfaces the omissions that authors are blind to because the details live in their heads.

Dataset analysis and summary statistics

When to use: When you have a dataset and need a rigorous first-pass analysis with attention to assumptions and limitations.

I will upload a dataset (or paste a summary) for a study in [SUB-FIELD]. Please: (1) describe the variables and their measurement levels, (2) report appropriate descriptive statistics and distributions, (3) identify any data quality issues (missingness, outliers, inconsistencies), (4) suggest the most suitable inferential tests given the design and variable types, (5) interpret what the patterns might mean for my hypothesis that [HYPOTHESIS], while explicitly noting any assumptions you are making. Flag anything you cannot determine without the raw data.
Context tip. Claude is conservative with data; the prompt explicitly asks it to flag assumptions, which prevents overconfident interpretations. Follow up by asking for a Methods paragraph that justifies the analytical choices.

Qualitative thematic analysis support

When to use: When you are coding interview or focus-group data and want a structured, reflexive first pass.

I will upload [NUMBER] interview transcripts (or field notes). Please help with an initial thematic analysis: (1) generate a preliminary codebook of 10–15 codes with brief definitions, (2) map these into 5–7 candidate themes, noting any hierarchical or overlapping relationships, (3) for each theme, provide 2 illustrative quotes with line references, (4) identify 2–3 negative cases or contradictory evidence, (5) suggest 2 follow-up analytic memos I should write to deepen the interpretation. Apply a [FRAMEWORK, e.g. reflexive / Braun & Clarke / constructivist grounded theory] lens. Do not invent quotes or participants.
Context tip. Upload transcripts as text files or paste them directly. For best results, first tell Claude your epistemological stance and any sensitising concepts so the coding inherits your theoretical framing rather than defaulting to generic descriptive codes.
04

Claude Connectors

Connectors plug external services, Canva, Google Drive, Google Calendar, GitHub, Notion, PubMed, Scholar Gateway, Gmail, and more, directly into Claude. Once linked, Claude can browse, search, read, and (where you allow it) write to those services inside a normal conversation, with per-tool permission controls.

Claude Customize → Connectors panel showing the Canva connector with Interactive and Read-only tool permissions
In Claude, open Settings → Customize → Connectors to browse, link, and fine-tune what each service is allowed to do.

05

Claude Cowork

Cowork is Claude's agentic mode inside the desktop app. Instead of replying turn-by-turn, Claude plans a multi-step task, runs code and shell commands in an isolated VM on your computer, reads and writes to local files you nominate, and delivers a finished artefact. A formatted document, a tidied folder, a spreadsheet, a synthesised report.

Key capabilities

Direct local file access

Claude reads from and writes to folders you nominate. No manual uploads, no copy-paste round trips.

Sub-agent coordination

Complex jobs are broken into sub-tasks that Claude runs in parallel, then stitches together into one deliverable.

Professional outputs

Produces polished artefacts. Excel sheets with working formulas, PowerPoint decks, formatted Word documents.

Long-running tasks

Works for extended periods without the conversation timeouts or context limits that interrupt normal chats.

Scheduled tasks

Type /schedule to have Claude run a saved task automatically on a cadence. Useful for weekly reading digests or status reports.

Projects in Cowork

Group related tasks into a persistent workspace with its own files, instructions, and memory for recurring or long-running work.

Global & folder instructions

Set standing instructions for every session (tone, output format, your role) and add project-specific context per folder.

Mobile assignment (Pro & Max)

Send a task from your phone; Claude executes it on your desktop against your local files and delivers results back to the conversation.

Full reference: Get started with Claude Cowork.

Prompts to copy & adapt

Format manuscript to journal template

When to use: You have a finished draft and the target journal's Word/LaTeX template. Upload both and let Claude reconcile them.

I have uploaded two files to this Project: (1) my manuscript draft, and (2) the target journal's template with its style guide. Reformat my manuscript to match the template exactly: section order and headings, citation style, reference format, figure/table numbering, and any word-count limits. Preserve my argument, data, and every citation verbatim. Do not rewrite for content. Produce a clean version and a change log listing every formatting adjustment you made so I can verify.
Context tip. Upload the actual template file, not just a link. If the template is a Word document with styles, ask Claude to preserve the style names so you can review with Track Changes later.

Audit manuscript against journal template

When to use: Before submission, when you want a systematic check that your draft meets every template requirement.

I have uploaded my formatted manuscript and the journal's official template/style guide. Audit the manuscript against the template and produce a checklist report: (1) required sections present or missing, (2) heading levels and numbering matching the template, (3) citation and reference format compliance, (4) abstract length and structure, (5) figure/table captions and numbering, (6) any word-count or page-limit breaches, (7) formatting anomalies (fonts, margins, line spacing). Flag each issue with its location in the manuscript and the exact template rule it breaks. Do not fix anything; just diagnose so I can decide what to change.
Context tip. Run this audit after every major revision. It catches template drift that happens when you move text between sections or add new figures.

Turn article summaries into a critical literature review

When to use: You have a document of individual article summaries and need a synthesis that identifies gaps, tensions, and your research problem.

I have uploaded a document containing summaries of journal articles on [TOPIC]. Turn these summaries into a critical literature review: (1) group the studies by theme or theoretical approach, (2) identify where authors agree, disagree, or talk past each other, (3) surface methodological limitations that recur across the literature, (4) pinpoint 2–3 specific gaps that my research could address, (5) draft a one-paragraph research problem statement that builds directly from the most important gap. Preserve every citation. Do not add studies I have not summarised.
Context tip. Upload the summary document to the Project knowledge base so Claude can cite specific files and passages in the final review.